By 1206, Genghis Khan had conquered all Mongol and Turkic tribes in Mongolia and southern Siberia. In 1207 his eldest son Jochi subjugated the Siberian forest people, the Uriankhai, the Oirats, Barga, Khakas, Buryats, Tuvans, Khori-Tumed, and Yenisei Kyrgyz. He then organized the Siberians into three tumens. Genghis Khan gave the Telengit and Tolos along the Irtysh River to an old companion, Qorchi. While the Barga, Tumed, Buriats, Khori, Keshmiti, and Bashkirs were organized in separate thousands, the Telengit, Tolos, Oirats and Yenisei Kirghiz were numbered into the regular tumens Genghis created a settlement of Chinese craftsmen and farmers at Kem-kemchik after the first phase of the Mongol conquest of the Jin dynasty. The Great Khans favored gyrfalcons, furs, women, and Kyrgyz horses for tribute.
Western Siberia came under the Golden Horde. The descendants of Orda Khan, the eldest son of Jochi, directly ruled the area. In the swamps of western Siberia, dog sled Yam stations were set up to facilitate collection of tribute.
In 1270, Kublai Khan sent a Chinese official, with a new batch of settlers, to serve as judge of the Kyrgyz and Tuvan basin areas (益蘭州 and 謙州). Ogedei's grandson Kaidu occupied portions of Central Siberia from 1275 on. The Yuan dynasty army under Kublai's Kipchak general Tutugh reoccupied the Kyrgyz lands in 1293. From then on the Yuan dynasty controlled large portions of Central and Eastern Siberia.